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Gene Prediction Graph: A Novel Graphical Machine Learning Approach Showing Gene Dependency for Cancer Prediction

Souvik Sarkar, Partho Mallick

Abstract


There was an emotional outpouring of unprecedented magnitude throughout the world because of India's World Cup hero and man of the tournament, Yuvraj Singh, has been diagnosed with cancer and is undergoing chemotherapy in the United States, thereby creating fresh interest to work on various cancer disease gene prediction methods. Almost a new way have been proposed here to compare the Gene prediction Network for normal and cancer affected patient to determine the affected relationships between the respective pair of genes using a new concept Gene Prediction Graph . Fuzzy Logic, Entropy, Symmetrical Uncertainty and some more well defined concept have been incorporated while developing this software for the generation of Gene Prediction Graph.

Keywords


Gene Prediction Graph, Fuzzy Logic, Entropy, Symmetrical Uncertainty.

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References


L. Yu and H. Liu, ―Redundancy based feature selection for microarray data,‖ Department of Computer Science and Engineering Arizona State University,‖ Technical Report, 2004.

Pradipta Maji and Sankar K. Pal ―Fuzzy–Rough Sets for Information Measures and Selection of Relevant Genes From Microarray Data‖, IEEE Transactions On Systems, Man, And Cybernetics—Part B: Cybernetics, Vol. 40, No. 3, June 2010.

Zhenyu Wang ―Neuro-Fuzzy Modeling for Microarray Cancer Gene Expression Data‖ Thesis, 2005.

―Principals of Digital Communication‖ book by J Das, SK Mullick & P K Chatterjee.

Lei Yu & Huan Liu ―Feature Selection for High-Dimensional Data: A Fast Correlation-Based Filter Solution‖ Proceedings of the Twentieth International Conference on Machine Learning (ICML-2003), Washington DC, 2003.

Yanfei Wang ―Fuzzy Methods for Analysis of Microarrays and Networks‖ Thesis submitted for the degree of Doctor of Philosophy in Discipline of Mathematical Sciences, 2011.


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